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| | BitString.cuh |
| | Defines the BitString class for compact character string storage and comparison.
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| | cuda_utils.cuh |
| | Provides utility functions and classes for CUDA operations.
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| |
| | data.cpp |
| | Implements utilities for saving performance data and formatting time.
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| |
| | data.hpp |
| | Defines utilities for managing performance data logging and timing.
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| |
| | genetics.cu |
| | Implementation of genetics utility functions.
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| | genetics.cuh |
| | Provides utilities for working with genetic data in various formats.
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| | msw.cu |
| | Implementation of CUDA-accelerated Most Significant Word finding algorithms.
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| |
| | msw.cuh |
| | CUDA-accelerated Most Significant Word finding algorithms.
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| |
| | nucleotide.cpp |
| | Implementation of nucleotide utility functions.
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| | nucleotide.hpp |
| | Defines nucleotide representation and related utility functions.
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| |
| | ParallelSkipTrie.cuh |
| | Defines the ParallelSkipTrie class, a GPU-accelerated variant of SkipTrie for efficient string operations.
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| |
| | ParallelZipTrie.cuh |
| | Defines the ParallelZipTrie class, extending ZipTrie with parallel key comparison capabilities using CUDA.
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| |
| | SkipTrie.hpp |
| | Defines the SkipTrie class, a skip list based data structure optimized for string storage and retrieval.
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| | synthetic.cpp |
| | Implementation of synthetic data generation utilities for benchmark testing.
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| | synthetic.hpp |
| | Provides utilities for generating synthetic string datasets for benchmark testing.
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| |
| | ZipTrie.hpp |
| | Defines the ZipTrie class, a dynamic, ranked trie structure for efficient string storage and prefix operations.
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| |
